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Bra008749 protein (Brassica rapa) - STRING interaction network
"Bra008749" - AT5G14620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008749AT5G14620 (E=3e-231) DRM2, DMT7 | DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (601 aa)    
Predicted Functional Partners:
Bra028566
AT5G10790 (E=7e-222) UBP22 | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (504 aa)
       
      0.890
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.876
AGO4
AT2G27040 (E=0.0) AGO4, OCP11 | AGO4 (ARGONAUTE 4); nucleic acid binding (922 aa)
     
 
  0.825
Bra039939
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1528 aa)
       
  0.816
Bra030191
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1520 aa)
       
  0.816
Bra010026
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1032 aa)
       
  0.762
Bra039916
AT2G18090 (E=6e-020) | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (144 aa)
       
  0.760
Bra024340
AT1G69770 (E=3e-209) CMT3 | CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase (805 aa)
       
  0.738
Bra040678
AT2G19520 (E=2e-267) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding (497 aa)
       
    0.736
Bra031085
AT2G19520 (E=6e-271) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding (504 aa)
       
    0.736
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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