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Bra008750 protein (Brassica rapa) - STRING interaction network
"Bra008750" - AT5G14600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008750AT5G14600 (E=4e-159) | tRNA (adenine-N1-)-methyltransferase (320 aa)    
Predicted Functional Partners:
Bra039321
AT2G45730 (E=1e-131) | eukaryotic initiation factor 3 gamma subunit family protein (440 aa)
     
  0.988
Bra000400
AT2G45730 (E=3e-108) | eukaryotic initiation factor 3 gamma subunit family protein (438 aa)
     
  0.988
Bra008798
AT5G13830 (E=1e-110) | FtsJ-like methyltransferase family protein (227 aa)
     
   
  0.834
Bra007291
AT3G56990 (E=0.0) EDA7 | EDA7 (embryo sac development arrest 7) (725 aa)
     
        0.830
Bra003262
AT3G56990 (E=1e-293) EDA7 | EDA7 (embryo sac development arrest 7) (708 aa)
     
        0.830
Bra019144
AT4G25730 (E=2e-266) | FtsJ-like methyltransferase family protein ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (818 aa)
     
   
  0.828
Bra010451
AT4G25730 (E=3e-229) | FtsJ-like methyltransferase family protein (765 aa)
     
   
  0.828
Bra024202
AT4G28450 (E=7e-223) | nucleotide binding / protein binding (452 aa)
     
        0.738
Bra026129
AT1G15460 (E=0.0) ATBOR4, BOR4 | BOR4 (REQUIRES HIGH BORON 4); anion exchanger (1569 aa)
     
   
  0.734
Bra016657
AT1G15440 (E=0.0) | transducin family protein / WD-40 repeat family protein (882 aa)
     
   
  0.734
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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