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Bra008762 protein (Brassica rapa) - STRING interaction network
"Bra008762" - AT5G14380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008762AT5G14380 (E=2e-008) AGP6 | AGP6 (Arabinogalactan proteins 6) (152 aa)    
Predicted Functional Partners:
Bra004732
AT2G42940 (E=6e-112) | DNA-binding family protein (261 aa)
       
 
  0.881
Bra000281
AT2G42940 (E=1e-106) | DNA-binding family protein (261 aa)
       
      0.622
Bra016853
AT2G42940 (E=4e-104) | DNA-binding family protein (261 aa)
       
      0.616
Bra017823
Uncharacterized protein (202 aa)
           
  0.477
Bra016902
AT2G41905 (E=6e-007) | unknown protein (61 aa)
     
   
  0.422
Bra014611
AT3G57690 (E=3e-007) AGP23, ATAGP23 | AGP23 (ARABINOGALACTAN-PROTEIN 23) (61 aa)
     
   
  0.422
Bra003296
AT3G57690 (E=6e-007) AGP23, ATAGP23 | AGP23 (ARABINOGALACTAN-PROTEIN 23) (61 aa)
     
   
  0.422
Bra000244
AT2G41905 (E=2e-006) | unknown protein (61 aa)
     
   
  0.422
Bra025551
AT5G40730 (E=4e-017) AGP24, ATAGP24 | AGP24 (67 aa)
           
  0.414
Bra015892
AT1G74800 (E=0.0) | galactosyltransferase family protein (662 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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