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Bra008769 protein (Brassica rapa) - STRING interaction network
"Bra008769" - AT5G14260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008769AT5G14260 (E=1e-247) | SET domain-containing protein (516 aa)    
Predicted Functional Partners:
Bra038488
AT4G16570 (E=0.0) ATPRMT7, PRMT7 | PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7); methyltransferase (723 aa)
           
  0.505
Bra011884
AT4G38970 (E=1e-169) | fructose-bisphosphate aldolase, putative (409 aa)
           
  0.408
Bra028543
AT3G52930 (E=2e-197) | fructose-bisphosphate aldolase, putative (358 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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