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Bra008772 protein (Brassica rapa) - STRING interaction network
"Bra008772" - AT5G14220 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
Bra008772AT5G14220 (E=3e-195) HEMG2, MEE61, PPO2 | HEMG2; electron carrier/ oxidoreductase/ protoporphyrinogen oxidase (521 aa)    
Predicted Functional Partners:
Bra009876
AT5G26030 (E=2e-221) FC1, FC-I, ATFC-I | FC1 (ferrochelatase 1); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (459 aa)
 
 
  0.977
Bra007748
AT2G30390 (E=2e-216) FC2, FC-II, ATFC-II | FC2 (FERROCHELATASE 2); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (495 aa)
 
 
  0.975
Bra032383
AT1G30370 (E=9e-273) | lipase class 3 family protein (528 aa)
     
        0.969
Bra014877
AT1G30370 (E=6e-238) | lipase class 3 family protein (426 aa)
     
        0.969
Bra018619
AT1G08520 (E=0.0) PDE166, CHLD | CHLD; ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding ; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (756 aa)
   
 
  0.962
Bra033402
AT1G03475 (E=4e-203) LIN2, HEMF1, ATCPO-I | LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase (389 aa)
   
 
  0.955
Bra032550
AT1G03475 (E=4e-200) LIN2, HEMF1, ATCPO-I | LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase (386 aa)
   
 
  0.955
Bra013314
AT4G18480 (E=3e-187) CHLI1, CH42, CH-42, CHL11, CHLI-1 | CHLI1; ATPase/ magnesium chelatase ; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (423 aa)
   
 
  0.943
Bra012595
AT4G18480 (E=9e-191) CHLI1, CH42, CH-42, CHL11, CHLI-1 | CHLI1; ATPase/ magnesium chelatase ; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (423 aa)
   
 
  0.943
Bra035849
AT5G63290 (E=3e-236) | coproporphyrinogen oxidase-related (484 aa)
       
  0.927
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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