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Bra008787 protein (Brassica rapa) - STRING interaction network
"Bra008787" - AT5G14010 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008787AT5G14010 (E=8e-035) | zinc finger (C2H2 type) family protein (153 aa)    
Predicted Functional Partners:
Bra015222
AT2G15560 (E=1e-165) | INVOLVED IN- response to oxidative stress; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF537 (InterPro-IPR007491); BEST Arabidopsis thaliana protein match is- EDA32 (embryo sac development arrest 32) (TAIR-AT3G62210.1); Has 184 Blast hits to 179 proteins in 38 species- Archae - 0; Bacteria - 4; Metazoa - 60; Fungi - 26; Plants - 90; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (468 aa)
           
  0.480
Bra023114
AT2G37340 (E=5e-121) RSZ33, ATRSZ33 | RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding (316 aa)
           
  0.478
Bra039894
AT2G17950 (E=2e-113) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (302 aa)
           
  0.434
Bra037245
AT2G17950 (E=2e-100) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (311 aa)
           
  0.434
Bra024485
AT2G17950 (E=9e-112) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (294 aa)
           
  0.434
Bra004523
AT2G46610 (E=5e-094) | arginine/serine-rich splicing factor, putative (246 aa)
           
  0.416
Bra007004
AT3G53500 (E=6e-105) RSZ32 | zinc knuckle (CCHC-type) family protein (297 aa)
           
  0.408
Bra003139
AT3G53500 (E=2e-114) RSZ32 | zinc knuckle (CCHC-type) family protein (291 aa)
           
  0.408
Bra024276
AT5G64200 (E=3e-057) ATSC35, SC35 | ATSC35; RNA binding / nucleic acid binding / nucleotide binding (280 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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