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Bra008792 protein (Brassica rapa) - STRING interaction network
"Bra008792" - AT5G13930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008792AT5G13930 (E=4e-219) CHS, TT4, ATCHS | TT4 (TRANSPARENT TESTA 4); naringenin-chalcone synthase (395 aa)    
Predicted Functional Partners:
Bra007142
AT3G55120 (E=2e-107) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (251 aa)
     
  0.978
Bra018311
AT2G30490 (E=3e-256) ATC4H, C4H, CYP73A5 | C4H (CINNAMATE-4-HYDROXYLASE); trans-cinnamate 4-monooxygenase (505 aa)
         
  0.957
Bra004109
AT1G65060 (E=1e-253) 4CL3 | 4CL3; 4-coumarate-CoA ligase (556 aa)
   
 
  0.943
Bra036480
AT5G48930 (E=2e-239) HCT | HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase (424 aa)
         
  0.935
Bra026737
AT1G15950 (E=3e-170) CCR1, IRX4, ATCCR1 | CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase (343 aa)
       
  0.922
Bra026090
AT1G15950 (E=3e-171) CCR1, IRX4, ATCCR1 | CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase (341 aa)
       
  0.922
Bra030429
AT1G51680 (E=7e-274) 4CL1, 4CL.1, AT4CL1 | 4CL1 (4-COUMARATE-COA LIGASE 1); 4-coumarate-CoA ligase (552 aa)
   
 
  0.908
Bra031266
AT3G21240 (E=7e-274) 4CL2, AT4CL2 | 4CL2 (4-COUMARATE-COA LIGASE 2); 4-coumarate-CoA ligase (552 aa)
   
 
  0.906
Bra036646
AT1G62940 (E=1e-268) ACOS5 | ACOS5 (ACYL-COA SYNTHETASE 5); 4-coumarate-CoA ligase/ long-chain-fatty-acid-CoA ligase/ medium-chain-fatty-acid-CoA ligase (1479 aa)
   
 
  0.903
Bra029561
AT4G05160 (E=2e-266) | 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (542 aa)
   
 
  0.903
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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