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Bra008798 protein (Brassica rapa) - STRING interaction network
"Bra008798" - AT5G13830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008798AT5G13830 (E=1e-110) | FtsJ-like methyltransferase family protein (227 aa)    
Predicted Functional Partners:
Bra039376
AT3G13180 (E=2e-269) | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (523 aa)
   
 
  0.998
Bra035594
AT5G55920 (E=4e-205) OLI2 | nucleolar protein, putative (640 aa)
   
 
  0.998
Bra030658
AT1G06560 (E=3e-281) | NOL1/NOP2/sun family protein (555 aa)
   
 
  0.998
Bra026418
AT4G26600 (E=2e-213) | nucleolar protein, putative (641 aa)
   
 
  0.998
Bra022117
AT3G13180 (E=9e-025) | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (188 aa)
   
 
  0.998
Bra015510
AT1G06560 (E=2e-293) | NOL1/NOP2/sun family protein (591 aa)
   
 
  0.998
Bra002867
AT5G55920 (E=1e-193) OLI2 | nucleolar protein, putative (659 aa)
   
 
  0.998
Bra003691
AT1G77030 (E=6e-286) | ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (852 aa)
     
 
  0.998
Bra006421
AT1G80770 (E=2e-181) PDE318 | PDE318 (pigment defective 318); GTP binding (459 aa)
     
 
  0.998
Bra040743
AT4G16630 (E=2e-266) | DEAD/DEAH box helicase, putative (RH28) (874 aa)
     
 
  0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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