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Bra008803 protein (Brassica rapa) - STRING interaction network
"Bra008803" - AT5G13780 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008803AT5G13780 (E=1e-082) | GCN5-related N-acetyltransferase, putative (167 aa)    
Predicted Functional Partners:
Bra035184
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (897 aa)
       
 
  0.955
Bra008474
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1274 aa)
       
 
  0.955
Bra003565
AT1G80410 (E=0.0) EMB2753 | EMB2753 (EMBRYO DEFECTIVE 2753); binding (1618 aa)
       
 
  0.955
Bra002650
AT5G58450 (E=0.0) | binding (999 aa)
       
 
  0.914
Bra040280
AT3G06610 (E=1e-038) | DNA-binding enhancer protein-related (115 aa)
     
 
  0.909
Bra029592
AT3G06610 (E=7e-038) | DNA-binding enhancer protein-related (115 aa)
     
 
  0.909
Bra019452
AT2G11000 (E=2e-228) ATMAK10, MAK10 | ATMAK10; acetyltransferase (736 aa)
       
  0.739
Bra017844
AT4G37670 (E=4e-129) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (569 aa)
   
 
  0.714
Bra011778
AT4G37670 (E=0.0) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (614 aa)
   
 
  0.714
Bra023537
AT5G15770 (E=4e-068) AtGNA1 | AtGNA1 (Arabidopsis thaliana glucose-6-phosphate acetyltransferase 1); N-acetyltransferase/ glucosamine 6-phosphate N-acetyltransferase (159 aa)
     
  0.676
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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