STRINGSTRING
Bra008804 protein (Brassica rapa) - STRING interaction network
"Bra008804" - AT5G13760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008804AT5G13760 (E=2e-253) | unknown protein (1033 aa)    
Predicted Functional Partners:
Bra020254
AT5G60370 (E=7e-143) | unknown protein (430 aa)
           
  0.518
Bra036635
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (702 aa)
           
  0.508
Bra034426
AT4G22990 (E=2e-220) | SPX (SYG1/Pho81/XPR1) domain-containing protein (676 aa)
           
  0.508
Bra027004
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (697 aa)
           
  0.508
Bra014869
AT4G11810 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (697 aa)
           
  0.508
Bra013668
AT4G22990 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (700 aa)
           
  0.508
Bra031861
AT5G65370 (E=3e-116) | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (293 aa)
           
  0.487
Bra036017
AT5G44265 (E=3e-016) | lipid binding (120 aa)
           
  0.478
Bra032998
AT1G33390 (E=0.0) | helicase domain-containing protein (1237 aa)
           
  0.476
Bra008953
AT5G11560 (E=0.0) | catalytic (1546 aa)
           
  0.474
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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