STRINGSTRING
Bra008808 protein (Brassica rapa) - STRING interaction network
"Bra008808" - AT5G13720 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008808AT5G13720 (E=2e-101) | LOCATED IN- chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP022348 (InterPro-IPR016804), Uncharacterised protein family UPF0114 (InterPro-IPR005134); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G19390.1); Has 294 Blast hits to 294 proteins in 98 species- Archae - 18; Bacteria - 168; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source- NCBI BLink). (270 aa)    
Predicted Functional Partners:
Bra009789
AT5G24690 (E=4e-201) | INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- RER1 (RETICULATA-RELATED 1) (TAIR-AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species- Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172; Viruses - 3; Other Eukaryotes - 44 (source- NCBI BLink). (529 aa)
           
  0.582
Bra036522
AT5G24690 (E=8e-203) | INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- RER1 (RETICULATA-RELATED 1) (TAIR-AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species- Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172; Viruses - 3; Other Eukaryotes - 44 (source- NCBI BLink). (520 aa)
           
  0.550
Bra029114
AT5G52540 (E=1e-161) | unknown protein (465 aa)
           
  0.540
Bra029639
AT3G07320 (E=5e-221) | glycosyl hydrolase family 17 protein (460 aa)
           
  0.519
Bra001918
AT3G23770 (E=1e-242) | glycosyl hydrolase family 17 protein (480 aa)
           
  0.519
Bra022598
AT5G52540 (E=2e-164) | unknown protein (443 aa)
           
  0.510
Bra009721
AT5G24000 (E=8e-177) | unknown protein (446 aa)
           
  0.510
Bra026126
AT1G15500 (E=1e-313) ATNTT2 | ATNTT2; ATP-ADP antiporter (609 aa)
           
  0.456
Bra035883
AT5G62720 (E=6e-095) | integral membrane HPP family protein (254 aa)
           
  0.414
Bra037175
AT5G66380 (E=1e-139) ATFOLT1 | ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1); binding / folic acid transporter (309 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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