STRINGSTRING
Bra008809 protein (Brassica rapa) - STRING interaction network
"Bra008809" - AT5G13680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008809AT5G13680 (E=0.0) ELO2, ABO1 | ABO1 (ABA-OVERLY SENSITIVE 1); transcription elongation regulator ; Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (1347 aa)    
Predicted Functional Partners:
Bra000619
AT5G50320 (E=1e-306) ELO3, HAG3, HAC8 | ELO3 (ELONGATA 3); histone acetyltransferase (565 aa)
     
  0.995
Bra034858
AT3G11220 (E=3e-169) ELO1 | Paxneb protein-related (357 aa)
     
  0.991
Bra040945
AT1G49540 (E=6e-034) | nucleotide binding (265 aa)
     
  0.975
Bra018791
AT1G49540 (E=0.0) | nucleotide binding (821 aa)
     
  0.975
Bra014198
AT1G49540 (E=9e-052) | nucleotide binding (492 aa)
     
  0.975
Bra035095
AT1G79150 (E=0.0) | binding (835 aa)
     
        0.779
Bra003620
AT1G79150 (E=5e-030) | binding (163 aa)
     
        0.779
Bra026877
AT1G13870 (E=5e-155) DRL1 | DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding (302 aa)
       
 
  0.766
Bra016723
AT1G13870 (E=5e-139) DRL1 | DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding (300 aa)
       
 
  0.766
Bra000397
AT2G45695 (E=8e-040) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Ubiquitin related modifier 1 (InterPro-IPR015221), Ubiquitin-related modifier 1 (InterPro-IPR017188), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro-IPR016155); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G61113.1); Has 238 Blast hits to 238 proteins in 125 species- Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 72; Plants - 18; Viruses - 0; Other Eukaryo [...] (99 aa)
       
 
  0.639
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]