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Bra008815 protein (Brassica rapa) - STRING interaction network
"Bra008815" - AT5G13600 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra008815AT5G13600 (E=2e-257) | phototropic-responsive NPH3 family protein (607 aa)    
Predicted Functional Partners:
Bra018824
AT1G50000 (E=2e-131) | methyltransferase (303 aa)
           
  0.429
Bra000274
AT2G42780 (E=7e-103) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of transcription; LOCATED IN- integral to membrane, nucleus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- RNA polymerase II transcription factor SIII, subunit A (InterPro-IPR010684); Has 143 Blast hits to 142 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 19; Plants - 18; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (406 aa)
           
  0.429
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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