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Bra008818 protein (Brassica rapa) - STRING interaction network
"Bra008818" - AT5G13570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008818AT5G13570 (E=1e-147) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (316 aa)    
Predicted Functional Partners:
Bra018630
AT1G08370 (E=1e-143) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (362 aa)
     
  0.985
Bra031623
AT1G08340 (E=5e-106) | rac GTPase activating protein, putative (649 aa)
     
  0.983
Bra030721
AT1G08370 (E=5e-125) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (367 aa)
     
  0.983
Bra000603
AT5G49970 (E=2e-246) ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5’-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (455 aa)
     
  0.983
Bra023205
AT4G24940 (E=3e-050) SAE1A, AT-SAE1-1, ATSAE1A | SAE1A (SUMO-ACTIVATING ENZYME 1A); SUMO activating enzyme (215 aa)
   
  0.971
Bra033638
AT5G42540 (E=0.0) XRN2 | XRN2 (EXORIBONUCLEASE 2); 5’-3’ exonuclease/ 5’-3’ exoribonuclease/ nucleic acid binding (1023 aa)
       
  0.968
Bra027972
AT1G54490 (E=0.0) AIN1, EIN5, XRN4, ATXRN4 | XRN4 (EXORIBONUCLEASE 4); 5’-3’ exonuclease/ 5’-3’ exoribonuclease/ nucleic acid binding (931 aa)
       
  0.968
Bra015828
AT1G75660 (E=0.0) XRN3 | XRN3; 5’-3’ exoribonuclease (1015 aa)
       
  0.968
Bra008212
AT1G75660 (E=0.0) XRN3 | XRN3; 5’-3’ exoribonuclease (1049 aa)
       
  0.968
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
 
  0.957
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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