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Bra008820 protein (Brassica rapa) - STRING interaction network
"Bra008820" - AT5G13550 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008820AT5G13550 (E=1e-314) SULTR4;1 | SULTR4;1; sulfate transmembrane transporter (694 aa)    
Predicted Functional Partners:
Bra011454
AT4G33580 (E=2e-127) ATBCA5, BCA5 | carbonic anhydrase family protein / carbonate dehydratase family protein (634 aa)
   
 
  0.804
Bra034573
AT4G33580 (E=7e-132) ATBCA5, BCA5 | carbonic anhydrase family protein / carbonate dehydratase family protein (625 aa)
   
 
  0.646
Bra040520
AT3G01500 (E=2e-153) CA1 | CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding ; Reversible hydration of carbon dioxide (333 aa)
   
 
  0.644
Bra039113
AT3G01500 (E=8e-149) CA1 | CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding ; Reversible hydration of carbon dioxide (334 aa)
   
 
  0.644
Bra037001
AT4G33580 (E=1e-130) ATBCA5, BCA5 | carbonic anhydrase family protein / carbonate dehydratase family protein ; Reversible hydration of carbon dioxide (321 aa)
   
 
  0.644
Bra035461
AT1G58180 (E=3e-146) ATBCA6, BCA6 | carbonic anhydrase family protein / carbonate dehydratase family protein ; Reversible hydration of carbon dioxide (290 aa)
   
 
  0.644
Bra024615
AT1G23730 (E=1e-109) ATBCA3, BCA3 | BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding ; Reversible hydration of carbon dioxide (259 aa)
   
 
  0.644
Bra024288
AT4G33580 (E=1e-087) ATBCA5, BCA5 | carbonic anhydrase family protein / carbonate dehydratase family protein ; Reversible hydration of carbon dioxide (306 aa)
   
 
  0.644
Bra023485
AT5G14740 (E=2e-137) CA2, CA18, BETA CA2 | CA2 (CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding ; Reversible hydration of carbon dioxide (259 aa)
   
 
  0.644
Bra018699
AT1G23730 (E=2e-078) ATBCA3, BCA3 | BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding ; Reversible hydration of carbon dioxide (226 aa)
   
 
  0.644
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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