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Bra008823 protein (Brassica rapa) - STRING interaction network
"Bra008823" - AT5G13520 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008823AT5G13520 (E=0.0) | peptidase M1 family protein (614 aa)    
Predicted Functional Partners:
Bra014459
AT2G45570 (E=6e-071) CYP76C2 | CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (453 aa)
       
  0.685
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
   
 
  0.662
Bra003809
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1380 aa)
   
 
  0.643
Bra027585
AT1G31800 (E=2e-044) CYP97A3, LUT5 | CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding (461 aa)
       
  0.617
Bra031465
AT1G49040 (E=1e-021) SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding (250 aa)
       
      0.612
Bra019375
AT1G49040 (E=8e-018) SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding (193 aa)
       
      0.612
Bra018775
AT1G49040 (E=0.0) SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding (1187 aa)
       
      0.612
Bra015951
AT1G73960 (E=0.0) TAF2 | TAF2 (TBP-ASSOCIATED FACTOR 2); metallopeptidase/ zinc ion binding (1391 aa)
           
  0.549
Bra039029
AT2G19900 (E=1e-314) ATNADP-ME1 | ATNADP-ME1 (NADP-malic enzyme 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (582 aa)
   
 
  0.547
Bra037347
AT4G00570 (E=5e-256) | malate oxidoreductase, putative (587 aa)
   
 
  0.547
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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