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Bra008831 protein (Brassica rapa) - STRING interaction network
"Bra008831" - AT5G13420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008831AT5G13420 (E=6e-201) | transaldolase, putative (439 aa)    
Predicted Functional Partners:
Bra014473
AT3G60750 (E=0.0) | transketolase, putative (735 aa)
 
  0.991
Bra004898
AT2G45290 (E=0.0) | transketolase, putative (736 aa)
 
  0.991
Bra007555
AT3G60750 (E=0.0) | transketolase, putative (738 aa)
 
  0.991
Bra027452
AT5G42740 (E=6e-182) | glucose-6-phosphate isomerase, cytosolic (PGIC) (542 aa)
   
 
  0.971
Bra019214
AT4G24620 (E=0.0) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (613 aa)
   
 
  0.971
Bra013819
AT4G24620 (E=1e-314) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (616 aa)
   
 
  0.971
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
 
  0.970
Bra003426
AT3G60750 (E=4e-140) | transketolase, putative (462 aa)
 
  0.962
Bra002822
AT5G56350 (E=3e-275) | pyruvate kinase, putative (498 aa)
   
 
  0.951
Bra023072
AT2G36530 (E=9e-250) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (444 aa)
     
  0.950
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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