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Bra008835 protein (Brassica rapa) - STRING interaction network
"Bra008835" - AT5G13330 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008835AT5G13330 (E=7e-051) Rap2.6L | Rap2.6L (related to AP2 6L); DNA binding / transcription factor (217 aa)    
Predicted Functional Partners:
Bra016460
AT1G20610 (E=3e-142) CYCB2;3 | CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator (410 aa)
       
      0.907
Bra037265
AT2G17620 (E=8e-144) CYCB2;1 | CYCB2;1 (Cyclin B2;1); cyclin-dependent protein kinase regulator (409 aa)
       
      0.612
Bra028741
AT5G06150 (E=1e-161) CYC1BAT, CYCB1;2 | CYC1BAT; cyclin-dependent protein kinase regulator (415 aa)
       
      0.612
Bra024504
AT2G17620 (E=3e-173) CYCB2;1 | CYCB2;1 (Cyclin B2;1); cyclin-dependent protein kinase regulator (419 aa)
       
      0.612
Bra017726
AT4G35620 (E=8e-144) CYCB2;2 | CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator (406 aa)
       
      0.612
Bra015762
AT1G76310 (E=3e-192) CYCB2;4 | CYCB2;4 (CYCLIN B2;4); cyclin-dependent protein kinase regulator (431 aa)
       
      0.612
Bra005880
AT5G06150 (E=7e-154) CYC1BAT, CYCB1;2 | CYC1BAT; cyclin-dependent protein kinase regulator (414 aa)
       
      0.612
Bra013272
AT4G17980 (E=6e-105) anac071 | anac071 (Arabidopsis NAC domain containing protein 71); transcription factor (292 aa)
           
  0.478
Bra012626
AT4G17980 (E=3e-118) anac071 | anac071 (Arabidopsis NAC domain containing protein 71); transcription factor (286 aa)
           
  0.478
Bra025012
AT5G46590 (E=6e-139) anac096 | anac096 (Arabidopsis NAC domain containing protein 96); transcription factor (290 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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