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Bra008838 protein (Brassica rapa) - STRING interaction network
"Bra008838" - AT5G13300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008838AT5G13300 (E=0.0) SFC, VAN3, AGD3 | SFC (SCARFACE); ARF GTPase activator/ phosphoinositide binding (826 aa)    
Predicted Functional Partners:
Bra028525
AT5G42080 (E=0.0) ADL1, ADL1A, AG68, DRP1A, RSW9 | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN); GTP binding / GTPase/ protein binding (610 aa)
       
  0.936
Bra024773
AT4G05330 (E=7e-053) AGD13 | AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding (290 aa)
     
  0.801
Bra013508
AT4G21160 (E=6e-075) ZAC | ZAC; ARF GTPase activator/ phospholipid binding (393 aa)
     
  0.801
Bra030611
AT1G05470 (E=2e-171) CVP2 | CVP2 (COTYLEDON VASCULAR PATTERN 2); hydrolase/ inositol trisphosphate phosphatase (624 aa)
     
  0.776
Bra026910
AT2G37550 (E=1e-058) ASP1, AGD7 | AGD7; ARF GTPase activator/ DNA binding / zinc ion binding (181 aa)
       
  0.754
Bra021766
AT2G32010 (E=3e-295) | endonuclease/exonuclease/phosphatase family protein (577 aa)
     
  0.752
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
     
  0.732
Bra030681
AT1G07420 (E=2e-155) ATSMO2, SMO2-1 | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (517 aa)
       
  0.717
Bra040444
AT3G63300 (E=2e-159) | phosphoinositide binding (486 aa)
       
 
  0.702
Bra034627
AT4G34450 (E=9e-301) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (902 aa)
     
  0.695
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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