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Bra008839 protein (Brassica rapa) - STRING interaction network
"Bra008839" - AT5G13290 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008839AT5G13290 (E=3e-172) SOL2, CRN | CRN (CORYNE); ATP binding / kinase/ protein kinase (395 aa)    
Predicted Functional Partners:
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
  0.995
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
  0.995
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
   
  0.977
Bra017025
AT2G40180 (E=1e-129) ATHPP2C5 | ATHPP2C5; catalytic/ protein serine/threonine phosphatase (564 aa)
   
  0.974
Bra022482
AT1G65380 (E=0.0) CLV2, AtRLP10 | CLV2 (clavata 2); protein binding / receptor signaling protein (714 aa)
     
  0.968
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
     
  0.967
Bra002223
AT5G19280 (E=8e-241) KAPP, RAG1 | KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE); phosphoprotein phosphatase/ protein kinase binding / protein serine/threonine phosphatase (571 aa)
   
  0.965
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
   
0.960
Bra009806
AT5G24970 (E=2e-271) | ABC1 family protein (1081 aa)
   
  0.896
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.860
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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