STRINGSTRING
Bra008842 protein (Brassica rapa) - STRING interaction network
"Bra008842" - AT5G13260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008842AT5G13260 (E=3e-192) | unknown protein (539 aa)    
Predicted Functional Partners:
Bra018775
AT1G49040 (E=0.0) SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding (1187 aa)
     
   
  0.515
Bra031848
AT5G65690 (E=0.0) PCK2, PEPCK | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (667 aa)
           
  0.459
Bra024410
AT5G65690 (E=0.0) PCK2, PEPCK | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (666 aa)
           
  0.459
Bra011792
AT4G37870 (E=0.0) PCK1, PEPCK | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (669 aa)
           
  0.459
Bra037536
AT3G19170 (E=4e-245) ATPREP1, ATZNMP | ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (1133 aa)
           
  0.449
Bra029358
AT5G23040 (E=3e-018) CDF1 | CDF1 (CELL GROWTH DEFECT FACTOR 1) (115 aa)
           
  0.449
Bra018811
AT1G49630 (E=0.0) ATPREP2 | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2); catalytic/ metal ion binding / metalloendopeptidase/ metallopeptidase/ zinc ion binding (1064 aa)
           
  0.449
Bra001738
AT3G19170 (E=0.0) ATPREP1, ATZNMP | ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (1074 aa)
           
  0.449
Bra031465
AT1G49040 (E=1e-021) SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding (250 aa)
           
  0.433
Bra019375
AT1G49040 (E=8e-018) SCD1 | SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1); protein binding (193 aa)
           
  0.433
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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