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Bra008844 protein (Brassica rapa) - STRING interaction network
"Bra008844" - AT5G13240 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008844AT5G13240 (E=3e-123) | transcription regulator (224 aa)    
Predicted Functional Partners:
Bra020267
AT5G60040 (E=0.0) NRPC1 | NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding / zinc ion binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1370 aa)
       
 
  0.903
Bra011622
AT4G35540 (E=2e-138) | transcription regulator/ zinc ion binding (467 aa)
     
 
  0.898
Bra004448
AT3G09360 (E=7e-056) | RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (375 aa)
     
 
  0.898
Bra001313
AT3G09360 (E=2e-188) | RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (720 aa)
     
 
  0.898
Bra001312
AT3G09360 (E=3e-190) | RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (611 aa)
     
 
  0.898
Bra026486
AT5G23710 (E=1e-049) | DNA binding / DNA-directed RNA polymerase (196 aa)
       
 
  0.844
Bra009704
AT5G23710 (E=8e-083) | DNA binding / DNA-directed RNA polymerase (233 aa)
       
 
  0.844
Bra025090
AT5G45140 (E=0.0) NRPC2 | NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1158 aa)
       
 
  0.661
Bra041010
AT1G63020 (E=1e-211) NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase (478 aa)
       
 
  0.639
Bra027611
AT1G63020 (E=0.0) NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1443 aa)
       
 
  0.639
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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