STRINGSTRING
Bra008847 protein (Brassica rapa) - STRING interaction network
"Bra008847" - AT5G13210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008847AT5G13210 (E=3e-275) | CONTAINS InterPro DOMAIN/s- Uncharacterized conserved protein UCP015417, vWA (InterPro-IPR011205), von Willebrand factor, type A (InterPro-IPR002035); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G24780.1); Has 250 Blast hits to 233 proteins in 28 species- Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 23; Plants - 45; Viruses - 15; Other Eukaryotes - 159 (source- NCBI BLink). (666 aa)    
Predicted Functional Partners:
Bra034354
AT2G27460 (E=0.0) | sec23/sec24 transport family protein (746 aa)
           
  0.483
Bra012017
AT2G27460 (E=0.0) | sec23/sec24 transport family protein (746 aa)
           
  0.483
Bra024966
AT5G47060 (E=1e-058) | senescence-associated protein-related (177 aa)
           
  0.449
Bra022099
AT5G47060 (E=5e-054) | senescence-associated protein-related (182 aa)
           
  0.449
Bra011464
AT4G33720 (E=5e-077) | pathogenesis-related protein, putative (174 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]