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Bra008849 protein (Brassica rapa) - STRING interaction network
"Bra008849" - AT5G13180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008849AT5G13180 (E=3e-116) ANAC083 | ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor (337 aa)    
Predicted Functional Partners:
Bra030820
AT1G56010 (E=3e-142) NAC1, ANAC022 | NAC1; transcription factor (321 aa)
       
   
0.599
Bra012065
AT5G66300 (E=8e-126) ANAC105, VND3, NAC105 | NAC105 (NAC DOMAIN CONTAINING PROTEIN 105); transcription factor (292 aa)
       
   
0.599
Bra007996
AT1G71930 (E=2e-150) VND7, ANAC030 | VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7); transcription activator/ transcription factor/ transcription regulator (327 aa)
       
 
0.554
Bra016098
AT1G71930 (E=4e-151) VND7, ANAC030 | VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7); transcription activator/ transcription factor/ transcription regulator (323 aa)
       
 
0.553
Bra005492
AT2G33480 (E=3e-080) ANAC041 | ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor (252 aa)
       
 
0.519
Bra021856
AT2G33480 (E=8e-082) ANAC041 | ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor (256 aa)
       
 
0.517
Bra022685
AT5G53950 (E=4e-162) CUC2, ANAC098 | CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (367 aa)
       
 
0.512
Bra003023
AT5G53950 (E=1e-155) CUC2, ANAC098 | CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (357 aa)
       
 
0.512
Bra029266
AT5G62380 (E=2e-133) VND6, ANAC101 | ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101); transcription activator/ transcription factor/ transcription regulator (364 aa)
       
   
0.509
Bra010077
AT5G62380 (E=2e-173) VND6, ANAC101 | ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101); transcription activator/ transcription factor/ transcription regulator (347 aa)
       
   
0.509
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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