STRINGSTRING
Bra008859 protein (Brassica rapa) - STRING interaction network
"Bra008859" - AT5G13070 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008859AT5G13070 (E=2e-102) | MSF1-like family protein (183 aa)    
Predicted Functional Partners:
Bra034549
AT4G33100 (E=4e-041) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Mitochondrial distribution and morphology family 35/apoptosis (InterPro-IPR007918); Has 160 Blast hits to 160 proteins in 70 species- Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 46; Plants - 13; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink). (91 aa)
       
  0.844
Bra011413
AT4G33100 (E=3e-038) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Mitochondrial distribution and morphology family 35/apoptosis (InterPro-IPR007918); Has 160 Blast hits to 160 proteins in 70 species- Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 46; Plants - 13; Viruses - 0; Other Eukaryotes - 6 (source- NCBI BLink). (84 aa)
       
  0.844
Bra001739
AT3G63220 (E=1e-168) | kelch repeat-containing F-box family protein (346 aa)
           
  0.666
Bra007384
AT3G58180 (E=2e-121) | PBS lyase HEAT-like repeat-containing protein ; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor (271 aa)
     
      0.627
Bra003326
AT3G58180 (E=7e-074) | PBS lyase HEAT-like repeat-containing protein (297 aa)
     
      0.627
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
       
      0.515
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
       
      0.515
Bra026547
AT2G03590 (E=5e-202) ATUPS1 | ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (390 aa)
           
  0.479
Bra005126
AT2G38280 (E=0.0) FAC1, ATAMPD | FAC1 (EMBRYONIC FACTOR1); AMP deaminase (841 aa)
           
  0.451
Bra037592
AT3G18290 (E=0.0) EMB2454 | EMB2454 (embryo defective 2454); protein binding / zinc ion binding (1247 aa)
     
   
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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