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Bra008860 protein (Brassica rapa) - STRING interaction network
"Bra008860" - AT5G13060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008860AT5G13060 (E=3e-228) ABAP1 | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1); protein binding (707 aa)    
Predicted Functional Partners:
Bra008604
AT5G16690 (E=1e-174) ORC3, ATORC3 | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3); protein binding (675 aa)
     
      0.641
Bra024904
AT2G01120 (E=3e-117) ORC4, ATORC4 | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4); protein binding ; Component of the origin recognition complex (ORC) that binds origins of replication (427 aa)
     
      0.637
Bra022834
AT2G31270 (E=8e-121) ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding (551 aa)
     
      0.635
Bra018272
AT2G31270 (E=3e-207) ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding (587 aa)
     
      0.635
Bra014797
AT3G54710 (E=2e-095) ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase (460 aa)
     
 
  0.630
Bra014795
AT3G54710 (E=1e-063) ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase (352 aa)
     
 
  0.630
Bra014341
AT2G01120 (E=2e-051) ORC4, ATORC4 | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4); protein binding (197 aa)
     
      0.627
Bra032365
AT1G30210 (E=2e-064) TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor (318 aa)
       
      0.622
Bra029471
AT4G12620 (E=0.0) ORC1B, ATORC1B, UNE13 | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / double-stranded methylated DNA binding / protein binding (813 aa)
     
      0.616
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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