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Bra008861 protein (Brassica rapa) - STRING interaction network
"Bra008861" - AT5G13050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008861AT5G13050 (E=1e-124) 5-FCL | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE); 5-formyltetrahydrofolate cyclo-ligase (296 aa)    
Predicted Functional Partners:
Bra003710
AT1G76730 (E=2e-153) | 5-formyltetrahydrofolate cyclo-ligase family protein (352 aa)
         
  0.959
Bra023168
AT1G31220 (E=8e-128) | phosphoribosylglycinamide formyltransferase (283 aa)
       
  0.937
Bra037350
AT4G00620 (E=2e-153) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (350 aa)
     
  0.758
Bra034763
AT3G12290 (E=6e-151) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (298 aa)
     
  0.758
Bra017109
AT2G38660 (E=1e-170) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (352 aa)
     
  0.758
Bra001447
AT3G12290 (E=7e-154) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (300 aa)
     
  0.758
Bra000856
AT4G00620 (E=6e-129) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (348 aa)
     
  0.758
Bra000082
AT2G38660 (E=8e-014) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (155 aa)
     
  0.758
Bra028746
AT5G05980 (E=2e-236) ATDFB, DFB | ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase (867 aa)
         
  0.706
Bra040080
AT4G32520 (E=4e-276) SHM3 | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding ; Interconversion of serine and glycine (529 aa)
     
  0.692
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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