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Bra008862 protein (Brassica rapa) - STRING interaction network
"Bra008862" - AT5G13030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008862AT5G13030 (E=0.0) | unknown protein (642 aa)    
Predicted Functional Partners:
Bra006138
AT5G12040 (E=1e-168) | carbon-nitrogen hydrolase family protein (364 aa)
     
   
  0.613
Bra006821
AT5G57410 (E=2e-176) | unknown protein (363 aa)
           
  0.581
Bra039905
AT2G17975 (E=5e-063) | zinc finger (Ran-binding) family protein (251 aa)
           
  0.573
Bra036169
AT5G48470 (E=4e-191) | unknown protein (396 aa)
           
  0.545
Bra011644
AT4G35850 (E=5e-227) | pentatricopeptide (PPR) repeat-containing protein (493 aa)
           
  0.541
Bra039683
AT1G53670 (E=5e-096) MSRB1, ATMSRB1 | MSRB1 (methionine sulfoxide reductase B 1); peptide-methionine-(S)-S-oxide reductase (204 aa)
         
  0.483
Bra038753
AT4G21860 (E=2e-082) MSRB2 | MSRB2 (methionine sulfoxide reductase B 2); peptide-methionine-(S)-S-oxide reductase (207 aa)
         
  0.483
Bra020868
AT4G21850 (E=5e-062) ATMSRB9 | methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (144 aa)
         
  0.483
Bra013565
AT4G21860 (E=2e-079) MSRB2 | MSRB2 (methionine sulfoxide reductase B 2); peptide-methionine-(S)-S-oxide reductase (214 aa)
         
  0.483
Bra000806
AT4G04830 (E=3e-068) ATMSRB5 | methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (142 aa)
         
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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