STRINGSTRING
Bra008863 protein (Brassica rapa) - STRING interaction network
"Bra008863" - AT5G13020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008863AT5G13020 (E=2e-187) | emsy N terminus domain-containing protein / ENT domain-containing protein (394 aa)    
Predicted Functional Partners:
Bra038213
AT3G19510 (E=5e-214) HAT3.1 | HAT3.1; DNA binding / sequence-specific DNA binding / transcription activator/ transcription factor (709 aa)
     
      0.621
Bra022429
AT3G19510 (E=3e-189) HAT3.1 | HAT3.1; DNA binding / sequence-specific DNA binding / transcription activator/ transcription factor (737 aa)
     
      0.621
Bra011153
AT4G29940 (E=4e-215) PRHA | PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); protein binding / sequence-specific DNA binding / transcription activator/ transcription factor (841 aa)
     
      0.621
Bra010310
AT4G29940 (E=1e-194) PRHA | PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); protein binding / sequence-specific DNA binding / transcription activator/ transcription factor (834 aa)
     
      0.621
Bra014402
AT3G62300 (E=2e-205) | agenet domain-containing protein (726 aa)
           
  0.573
Bra007670
AT3G62300 (E=1e-103) | agenet domain-containing protein (656 aa)
           
  0.573
Bra031661
AT1G09320 (E=5e-201) | agenet domain-containing protein (497 aa)
           
  0.526
Bra028851
AT5G03080 (E=5e-107) | phosphatidic acid phosphatase-related / PAP2-related (222 aa)
           
  0.499
Bra009551
AT5G03080 (E=1e-101) | phosphatidic acid phosphatase-related / PAP2-related (226 aa)
           
  0.499
Bra025278
AT3G27460 (E=1e-122) | unknown protein (270 aa)
           
  0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]