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Bra008865 protein (Brassica rapa) - STRING interaction network
"Bra008865" - AT5G12990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008865AT5G12990 (E=1e-020) CLE40 | CLE40 (CLAVATA3/ESR-RELATED 40); protein binding / receptor binding (82 aa)    
Predicted Functional Partners:
Bra034340
AT2G27250 (E=1e-022) CLV3 | CLV3 (CLAVATA3); kinase activator/ protein binding / receptor binding (77 aa)
           
  0.604
Bra022482
AT1G65380 (E=0.0) CLV2, AtRLP10 | CLV2 (clavata 2); protein binding / receptor signaling protein (714 aa)
           
  0.574
Bra015079
AT3G24770 (E=8e-017) CLE41 | CLE41 (CLAVATA3/ESR-RELATED 41); protein binding / receptor binding (55 aa)
           
  0.544
Bra015812
AT1G75820 (E=0.0) CLV1, FAS3, FLO5 | CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase (760 aa)
           
  0.543
Bra028749
AT3G11260 (E=2e-053) WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor (174 aa)
           
  0.541
Bra009132
AT3G11260 (E=4e-058) WOX5 | WOX5 (WUSCHEL RELATED HOMEOBOX 5); transcription factor (192 aa)
           
  0.541
Bra008839
AT5G13290 (E=3e-172) SOL2, CRN | CRN (CORYNE); ATP binding / kinase/ protein kinase (395 aa)
           
  0.526
Bra007448
AT3G59420 (E=0.0) ACR4 | ACR4 (ARABIDOPSIS CRINKLY4); kinase/ transmembrane receptor protein kinase (902 aa)
           
  0.505
Bra016015
AT1G73165 (E=2e-028) CLE1 | CLE1 (CLAVATA3/ESR-RELATED 1); protein binding / receptor binding (73 aa)
           
  0.504
Bra039894
AT2G17950 (E=2e-113) WUS, PGA6, WUS1 | WUS (WUSCHEL); DNA binding / protein binding / transcription factor/ transcription regulator (302 aa)
           
  0.503
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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