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Bra008871 protein (Brassica rapa) - STRING interaction network
"Bra008871" - AT5G12910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008871AT5G12910 (E=1e-034) | histone H3, putative (134 aa)    
Predicted Functional Partners:
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.995
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
       
  0.995
Bra018060
AT3G48430 (E=0.0) REF6 | REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (1385 aa)
     
  0.985
Bra009474
AT5G04240 (E=0.0) ELF6 | ELF6 (EARLY FLOWERING 6); transcription factor (1160 aa)
     
  0.985
Bra036619
AT5G27670 (E=7e-042) HTA7 | HTA7 (HISTONE H2A 7); DNA binding (151 aa)
     
  0.983
Bra035755
AT3G20670 (E=2e-053) HTA13 | HTA13; DNA binding (133 aa)
     
  0.983
Bra031646
AT1G54690 (E=8e-042) HTA3, H2AXB, G-H2AX, GAMMA-H2AX | GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding (142 aa)
     
  0.983
Bra030745
AT1G54690 (E=6e-053) HTA3, H2AXB, G-H2AX, GAMMA-H2AX | GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding (142 aa)
     
  0.983
Bra030460
AT1G51060 (E=1e-054) HTA10 | HTA10; DNA binding (133 aa)
     
  0.983
Bra029498
AT1G51060 (E=6e-018) HTA10 | HTA10; DNA binding (120 aa)
     
  0.983
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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