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Bra008872 protein (Brassica rapa) - STRING interaction network
"Bra008872" - AT5G12900 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008872AT5G12900 (E=1e-187) | unknown protein (520 aa)    
Predicted Functional Partners:
Bra007241
AT3G56370 (E=3e-296) | leucine-rich repeat transmembrane protein kinase, putative (959 aa)
       
 
  0.943
Bra028916
AT5G01890 (E=6e-260) | leucine-rich repeat transmembrane protein kinase, putative (690 aa)
       
 
  0.751
Bra036667
AT2G14110 (E=4e-098) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- HAD-superfamily phosphatase, subfamily IIIC (InterPro-IPR010033); Has 209 Blast hits to 204 proteins in 90 species- Archae - 0; Bacteria - 19; Metazoa - 51; Fungi - 76; Plants - 44; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (190 aa)
           
  0.541
Bra019356
AT4G22790 (E=2e-206) | MATE efflux family protein (505 aa)
           
  0.473
Bra013648
AT4G22790 (E=5e-199) | MATE efflux family protein (504 aa)
           
  0.473
Bra011790
AT4G37850 (E=2e-123) | basic helix-loop-helix (bHLH) family protein (336 aa)
           
  0.406
Bra010617
AT4G37850 (E=1e-124) | basic helix-loop-helix (bHLH) family protein (334 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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