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Bra008879 protein (Brassica rapa) - STRING interaction network
"Bra008879" - AT5G12480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008879AT5G12480 (E=9e-292) CPK7 | CPK7 (calmodulin-domain protein kinase 7); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (532 aa)    
Predicted Functional Partners:
Bra000985
AT3G01830 (E=1e-041) | calmodulin-related protein, putative (141 aa)
     
  0.867
Bra039037
AT3G29000 (E=9e-041) | calcium-binding EF hand family protein (105 aa)
       
  0.864
Bra036140
AT5G49480 (E=2e-064) ATCP1 | ATCP1 (Ca2+-binding protein 1); calcium ion binding (160 aa)
       
  0.864
Bra033077
AT5G39670 (E=2e-054) | calcium-binding EF hand family protein (186 aa)
       
  0.864
Bra031993
AT3G03430 (E=4e-040) | polcalcin, putative / calcium-binding pollen allergen, putative (83 aa)
       
  0.864
Bra031033
AT1G18530 (E=1e-039) | calmodulin, putative (110 aa)
       
  0.864
Bra030632
AT1G05990 (E=1e-033) | calcium-binding protein, putative (82 aa)
       
  0.864
Bra030349
AT5G39670 (E=5e-071) | calcium-binding EF hand family protein (185 aa)
       
  0.864
Bra028438
AT5G39670 (E=9e-081) | calcium-binding EF hand family protein (196 aa)
       
  0.864
Bra028360
AT3G24110 (E=4e-098) | calcium-binding EF hand family protein (285 aa)
       
  0.864
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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