STRINGSTRING
Bra008882 protein (Brassica rapa) - STRING interaction network
"Bra008882" - AT5G12460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008882AT5G12460 (E=7e-120) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF604 (InterPro-IPR006740); BEST Arabidopsis thaliana protein match is- fringe-related protein (TAIR-AT2G37730.1); Has 355 Blast hits to 351 proteins in 67 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 121; Plants - 131; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (468 aa)    
Predicted Functional Partners:
Bra027730
AT1G64460 (E=3e-149) | phosphatidylinositol 3- and 4-kinase family protein (533 aa)
     
   
  0.577
Bra027702
AT1G64460 (E=3e-155) | phosphatidylinositol 3- and 4-kinase family protein (498 aa)
     
   
  0.577
Bra026464
AT5G24240 (E=6e-180) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (466 aa)
     
   
  0.577
Bra006947
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
   
  0.577
Bra012402
AT5G24240 (E=9e-242) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (1162 aa)
     
   
  0.577
Bra009742
AT5G24240 (E=1e-274) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
   
  0.577
Bra006947.1-P
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
   
  0.577
Bra040271
AT3G06440 (E=3e-179) | galactosyltransferase family protein (463 aa)
       
  0.560
Bra038787
AT4G21060 (E=3e-020) | galactosyltransferase family protein (85 aa)
       
  0.560
Bra024660
AT1G27120 (E=2e-288) | galactosyltransferase family protein (647 aa)
       
  0.560
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]