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Bra008889 protein (Brassica rapa) - STRING interaction network
"Bra008889" - AT5G12410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008889AT5G12410 (E=3e-103) | THUMP domain-containing protein (365 aa)    
Predicted Functional Partners:
Bra001125
AT3G04820 (E=3e-169) | pseudouridine synthase (678 aa)
     
      0.912
Bra037748
AT5G63610 (E=1e-234) HEN3, CDKE;1, ATCDK8 | CDKE;1 (CYCLIN-DEPENDENT KINASE E;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (468 aa)
       
      0.910
Bra034316
AT2G27020 (E=3e-124) PAG1 | PAG1; endopeptidase/ peptidase/ threonine-type endopeptidase (249 aa)
       
      0.910
Bra025176
AT3G25980 (E=3e-024) | mitotic spindle checkpoint protein, putative (MAD2) (95 aa)
       
      0.907
Bra017340
AT3G25980 (E=2e-112) | mitotic spindle checkpoint protein, putative (MAD2) (209 aa)
       
      0.907
Bra015170
AT2G05840 (E=6e-135) PAA2 | PAA2 (20S PROTEASOME SUBUNIT PAA2); endopeptidase/ peptidase/ threonine-type endopeptidase (246 aa)
       
      0.907
Bra013157
AT2G05840 (E=1e-133) PAA2 | PAA2 (20S PROTEASOME SUBUNIT PAA2); endopeptidase/ peptidase/ threonine-type endopeptidase (246 aa)
       
      0.907
Bra040561
AT1G53850 (E=5e-131) PAE1 | PAE1; endopeptidase/ peptidase/ threonine-type endopeptidase (237 aa)
       
      0.905
Bra039695
AT1G53850 (E=2e-128) PAE1 | PAE1; endopeptidase/ peptidase/ threonine-type endopeptidase (678 aa)
       
      0.905
Bra037183
AT5G13980 (E=0.0) | glycosyl hydrolase family 38 protein (1151 aa)
       
      0.905
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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