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Bra008890 protein (Brassica rapa) - STRING interaction network
"Bra008890" - AT5G12400 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008890AT5G12400 (E=9e-254) | PHD finger transcription factor, putative (1727 aa)    
Predicted Functional Partners:
Bra040221
AT3G06400 (E=0.0) CHR11 | CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (1049 aa)
     
 
  0.791
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
 
  0.791
Bra035436
AT2G44980 (E=4e-013) | transcription regulatory protein SNF2, putative (140 aa)
     
 
  0.791
Bra023689
AT5G18620 (E=3e-274) CHR17 | CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (1101 aa)
     
 
  0.791
Bra020751
AT3G06400 (E=0.0) CHR11 | CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (1053 aa)
     
 
  0.791
Bra012099
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (771 aa)
     
 
  0.791
Bra004881
AT2G44980 (E=5e-215) | transcription regulatory protein SNF2, putative (647 aa)
     
 
  0.791
Bra002173
AT5G18620 (E=0.0) CHR17 | CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding (1064 aa)
     
 
  0.791
Bra012815
AT3G52250 (E=0.0) | DNA binding / transcription factor (1904 aa)
     
      0.651
Bra006915
AT3G52250 (E=0.0) | DNA binding / transcription factor (1643 aa)
     
      0.651
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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