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Bra008892 protein (Brassica rapa) - STRING interaction network
"Bra008892" - AT5G12380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008892AT5G12380 (E=4e-159) | annexin, putative (315 aa)    
Predicted Functional Partners:
Bra035457
AT1G58220 (E=2e-125) | myb family transcription factor (447 aa)
       
      0.612
Bra027882
AT1G58220 (E=2e-191) | myb family transcription factor (713 aa)
       
      0.612
Bra019998
AT1G09710 (E=3e-172) | DNA binding (577 aa)
       
      0.612
Bra003319
AT3G58110 (E=8e-136) | unknown protein (781 aa)
       
      0.612
Bra019218
AT4G24580 (E=2e-165) REN1 | REN1 (ROP1 ENHANCER 1); Rho GTPase activator/ Rho GTPase binding / phosphoinositide binding (913 aa)
           
  0.545
Bra008894
AT5G12360 (E=6e-071) | unknown protein (189 aa)
           
  0.543
Bra013816
AT4G24580 (E=0.0) REN1 | REN1 (ROP1 ENHANCER 1); Rho GTPase activator/ Rho GTPase binding / phosphoinositide binding (937 aa)
           
  0.514
Bra010488
AT4G24580 (E=3e-281) REN1 | REN1 (ROP1 ENHANCER 1); Rho GTPase activator/ Rho GTPase binding / phosphoinositide binding (907 aa)
           
  0.514
Bra001538
AT3G14190 (E=5e-078) | unknown protein (223 aa)
           
  0.459
Bra004918
AT2G45510 (E=2e-255) CYP704A2 | CYP704A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (511 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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