STRINGSTRING
Bra008894 protein (Brassica rapa) - STRING interaction network
"Bra008894" - AT5G12360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008894AT5G12360 (E=6e-071) | unknown protein (189 aa)    
Predicted Functional Partners:
Bra008892
AT5G12380 (E=4e-159) | annexin, putative (315 aa)
           
  0.543
Bra022586
AT5G52340 (E=0.0) ATEXO70A2 | ATEXO70A2 (exocyst subunit EXO70 family protein A2); protein binding (632 aa)
           
  0.528
Bra034072
AT3G09520 (E=6e-236) ATEXO70H4 | ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding (608 aa)
           
  0.505
Bra029772
AT3G09520 (E=5e-250) ATEXO70H4 | ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding (614 aa)
           
  0.505
Bra007260
AT3G56640 (E=0.0) | exocyst complex subunit Sec15-like family protein (748 aa)
           
  0.487
Bra036274
AT3G56640 (E=3e-208) | exocyst complex subunit Sec15-like family protein (785 aa)
           
  0.478
Bra018558
AT4G02350 (E=0.0) | exocyst complex subunit Sec15-like family protein (796 aa)
           
  0.478
Bra001305
AT3G09530 (E=6e-173) ATEXO70H3 | ATEXO70H3 (exocyst subunit EXO70 family protein H3); protein binding (620 aa)
           
  0.451
Bra003706
AT1G76850 (E=0.0) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1082 aa)
           
  0.416
Bra008893
AT5G12370 (E=0.0) SEC10 | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) (855 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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