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Bra008898 protein (Brassica rapa) - STRING interaction network
"Bra008898" - AT5G12330 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008898AT5G12330 (E=3e-127) LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization (305 aa)    
Predicted Functional Partners:
Bra028063
AT1G34670 (E=4e-160) AtMYB93 | AtMYB93 (myb domain protein 93); DNA binding / transcription factor (364 aa)
           
  0.469
Bra019075
AT4G27070 (E=4e-255) TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase (472 aa)
           
  0.468
Bra002954
AT5G54810 (E=1e-250) TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase (465 aa)
           
  0.468
Bra023102
AT2G37170 (E=9e-140) PIP2B, PIP2;2 | PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2); water channel (283 aa)
           
  0.463
Bra008749
AT5G14620 (E=3e-231) DRM2, DMT7 | DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (601 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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