STRINGSTRING
Bra008902 protein (Brassica rapa) - STRING interaction network
"Bra008902" - AT5G12260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008902AT5G12260 (E=9e-278) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- glycosyltransferase family protein 2 (TAIR-AT5G60700.1); Has 66 Blast hits to 66 proteins in 22 species- Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 12; Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (613 aa)    
Predicted Functional Partners:
Bra040745
AT4G16650 (E=9e-271) | unknown protein (529 aa)
           
  0.476
Bra038495
AT4G16650 (E=2e-298) | unknown protein (550 aa)
           
  0.476
Bra035709
AT2G28310 (E=3e-214) | unknown protein (382 aa)
           
  0.476
Bra031443
AT1G61240 (E=7e-231) | unknown protein (425 aa)
           
  0.476
Bra028058
AT1G34550 (E=1e-265) EMB2756 | EMB2756 (EMBRYO DEFECTIVE 2756) (652 aa)
           
  0.476
Bra027094
AT1G61240 (E=2e-230) | unknown protein (425 aa)
           
  0.476
Bra027051
AT1G62330 (E=0.0) | unknown protein (651 aa)
           
  0.476
Bra025759
AT1G19710 (E=4e-232) | glycosyl transferase family 1 protein (478 aa)
           
  0.476
Bra025413
AT3G30300 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF246, plant (InterPro-IPR004348); BEST Arabidopsis thaliana protein match is- EDA30 (embryo sac development arrest 30) (TAIR-AT3G03810.1); Has 512 Blast hits to 417 proteins in 20 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 512; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (680 aa)
           
  0.476
Bra025239
AT3G26950 (E=5e-196) | unknown protein (574 aa)
           
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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