STRINGSTRING
Bra008907 protein (Brassica rapa) - STRING interaction network
"Bra008907" - AT5G12210 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008907AT5G12210 (E=2e-167) | geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative (313 aa)    
Predicted Functional Partners:
Bra019225
AT4G24490 (E=2e-310) | protein prenyltransferase (679 aa)
     
  0.979
Bra013807
AT4G24490 (E=0.0) | protein prenyltransferase (679 aa)
     
  0.979
Bra033742
AT1G10095 (E=2e-174) | protein prenyltransferase (421 aa)
     
  0.977
Bra027545
AT1G10095 (E=2e-092) | protein prenyltransferase (329 aa)
     
  0.977
Bra039538
AT3G59380 (E=2e-158) FTA, PLP, ATFTA, PFT/PGGT-IALPHA | FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase (325 aa)
     
  0.955
Bra031488
AT3G59380 (E=3e-016) FTA, PLP, ATFTA, PFT/PGGT-IALPHA | FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase (70 aa)
     
  0.955
Bra012780
AT4G15550 (E=4e-153) IAGLU | IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups (581 aa)
     
  0.955
Bra029586
AT3G06540 (E=1e-231) | GDP dissociation inhibitor family protein / Rab GTPase activator family protein (567 aa)
       
  0.941
Bra040276
AT3G06550 (E=1e-270) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- Cas1p-like (InterPro-IPR012419); BEST Arabidopsis thaliana protein match is- O-acetyltransferase family protein (TAIR-AT2G34410.2); Has 185 Blast hits to 183 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (832 aa)
       
  0.918
Bra004805
AT2G44100 (E=2e-252) ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor (444 aa)
     
  0.838
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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