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CPI-3 protein (Brassica rapa) - STRING interaction network
"CPI-3" - AT5G12140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPI-3AT5G12140 (E=1e-046) ATCYS1 | ATCYS1 (A. thaliana cystatin-1); cysteine-type endopeptidase inhibitor (101 aa)    
Predicted Functional Partners:
Bra017726
AT4G35620 (E=8e-144) CYCB2;2 | CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator (406 aa)
       
      0.853
Bra038240
AT3G19910 (E=3e-115) | zinc finger (C3HC4-type RING finger) family protein (333 aa)
           
  0.505
Bra022466
AT3G19910 (E=4e-113) | zinc finger (C3HC4-type RING finger) family protein (324 aa)
           
  0.505
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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