STRINGSTRING
Bra008913 protein (Brassica rapa) - STRING interaction network
"Bra008913" - AT5G12130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008913AT5G12130 (E=1e-095) PDE149, ATTERC | PDE149 (PIGMENT DEFECTIVE 149) (349 aa)    
Predicted Functional Partners:
Bra022445
AT3G19670 (E=0.0) | protein binding (1119 aa)
           
  0.541
Bra025641
AT1G02520 (E=1e-034) PGP11 | PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances (208 aa)
         
  0.514
Bra020036
AT5G19370 (E=2e-062) | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (301 aa)
           
  0.465
Bra041007
AT1G44910 (E=6e-210) | protein binding (1047 aa)
           
  0.457
Bra032872
AT5G44050 (E=5e-017) | MATE efflux family protein (108 aa)
         
  0.414
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
         
  0.403
Bra003809
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1380 aa)
         
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]