STRINGSTRING
Bra008932 protein (Brassica rapa) - STRING interaction network
"Bra008932" - AT5G11870 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008932AT5G11870 (E=1e-118) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 7 growth stages; BEST Arabidopsis thaliana protein match is- SAG18 (SENESCENCE ASSOCIATED GENE 18) (TAIR-AT1G71190.1); Has 117 Blast hits to 115 proteins in 40 species- Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 27 (source- NCBI BLink). (262 aa)    
Predicted Functional Partners:
Bra000810
AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)
       
      0.829
Bra029532
AT4G04950 (E=5e-091) | thioredoxin family protein (339 aa)
       
      0.618
Bra004123
AT1G65650 (E=3e-160) UCH2 | UCH2; ubiquitin thiolesterase/ ubiquitin-specific protease (329 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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