STRINGSTRING
Bra008938 protein (Brassica rapa) - STRING interaction network
"Bra008938" - AT5G11770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008938AT5G11770 (E=2e-102) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (216 aa)    
Predicted Functional Partners:
Bra010822
ATCG01110 (E=5e-030) NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. (71 aa)
 
  0.999
Bra041055
ATCG01090 (E=2e-075) NDHI | Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex ; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (172 aa)
 
  0.998
Bra003627
AT1G79010 (E=1e-113) | NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) (222 aa)
 
  0.998
Bra035083
AT1G79010 (E=6e-116) | NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) (222 aa)
 
  0.998
Bra026031
AT1G16680 (E=8e-134) | DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative (654 aa)
 
  0.998
Bra009347
AT5G08530 (E=5e-233) CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH (407 aa)
   
  0.997
Bra005998
AT5G08530 (E=1e-232) CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH (407 aa)
   
  0.997
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
   
  0.997
Bra000873
AT4G02580 (E=1e-144) | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (255 aa)
   
  0.997
Bra028124
AT5G37510 (E=0.0) EMB1467 | EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron carrier/ iron-sulfur cluster binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH (746 aa)
   
  0.995
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]