STRINGSTRING
Bra008941 protein (Brassica rapa) - STRING interaction network
"Bra008941" - AT5G11730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008941AT5G11730 (E=5e-195) | unknown protein (386 aa)    
Predicted Functional Partners:
Bra040646
AT3G05320 (E=6e-165) | unknown protein (339 aa)
           
  0.477
Bra036124
AT5G28910 (E=7e-266) | unknown protein (533 aa)
           
  0.477
Bra012890
AT3G50760 (E=2e-179) GATL2 | GATL2 (Galacturonosyltransferase-like 2); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (338 aa)
           
  0.477
Bra010015
AT5G28910 (E=1e-269) | unknown protein (540 aa)
           
  0.477
Bra006319
AT5G15740 (E=1e-271) | unknown protein (508 aa)
           
  0.477
Bra001038
AT3G02250 (E=6e-282) | unknown protein (514 aa)
           
  0.477
Bra038960
AT4G13990 (E=3e-253) | exostosin family protein (512 aa)
           
  0.454
Bra028365
AT3G24040 (E=1e-200) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (420 aa)
           
  0.406
Bra010065
AT5G62220 (E=3e-227) | exostosin family protein (524 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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