STRINGSTRING
Bra008952 protein (Brassica rapa) - STRING interaction network
"Bra008952" - AT5G11590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008952AT5G11590 (E=2e-091) TINY2 | TINY2 (TINY2); DNA binding / transcription factor (240 aa)    
Predicted Functional Partners:
Bra029289
AT5G62090 (E=5e-200) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 10 growth stages; BEST Arabidopsis thaliana protein match is- SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR-AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species- Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source- NCBI BLink). (661 aa)
           
  0.529
Bra019159
AT4G25515 (E=4e-207) SLK3 | SLK3 (SEUSS-LIKE 3); transcription regulator (682 aa)
           
  0.529
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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