STRINGSTRING
Bra008958 protein (Brassica rapa) - STRING interaction network
"Bra008958" - AT5G11480 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008958AT5G11480 (E=3e-154) | GTP binding (322 aa)    
Predicted Functional Partners:
Bra009004
AT5G10920 (E=1e-258) | argininosuccinate lyase, putative / arginosuccinase, putative (940 aa)
   
   
  0.585
Bra017844
AT4G37670 (E=4e-129) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (569 aa)
              0.557
Bra011778
AT4G37670 (E=0.0) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (614 aa)
              0.557
Bra037168
AT5G66470 (E=3e-196) | GTP binding / RNA binding (456 aa)
 
   
  0.547
Bra026041
AT1G16540 (E=0.0) SIR3, LOS5, ABA3, ATABA3 | ABA3 (ABA DEFICIENT 3); Mo-molybdopterin cofactor sulfurase/ selenocysteine lyase ; Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form (820 aa)
              0.522
Bra035563
AT5G55220 (E=9e-245) | trigger factor type chaperone family protein (545 aa)
   
   
  0.517
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
         
  0.497
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
     
   
  0.492
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
 
  0.477
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
 
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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