STRINGSTRING
Bra008962 protein (Brassica rapa) - STRING interaction network
"Bra008962" - AT5G11440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008962AT5G11440 (E=3e-039) CID5, IPD1 | CID5; protein binding (186 aa)    
Predicted Functional Partners:
Bra016118
AT1G71770 (E=2e-288) PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor ; Binds the poly(A) tail of mRNA (684 aa)
       
 
  0.635
Bra034603
AT4G34110 (E=4e-269) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (619 aa)
       
 
  0.620
Bra011488
AT4G34110 (E=2e-264) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (613 aa)
       
 
  0.620
Bra021526
AT3G14010 (E=3e-158) CID4 | CID4 (CTC-Interacting Domain 4); protein binding (641 aa)
           
  0.583
Bra001533
AT3G14010 (E=4e-124) CID4 | CID4 (CTC-Interacting Domain 4); protein binding (1029 aa)
           
  0.583
Bra032775
AT4G14270 (E=2e-050) | Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. (138 aa)
           
  0.577
Bra037969
AT1G54170 (E=4e-192) CID3 | CID3 (CTC-Interacting Domain 3) (594 aa)
           
  0.575
Bra014367
AT1G54170 (E=7e-119) CID3 | CID3 (CTC-Interacting Domain 3) (538 aa)
           
  0.575
Bra041017
AT1G53650 (E=3e-118) CID8 | CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding (291 aa)
           
  0.574
Bra038139
AT1G53650 (E=3e-130) CID8 | CID8 (CTC-INTERACTING DOMAIN 8); RNA binding / protein binding (314 aa)
           
  0.574
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]