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Bra008966 protein (Brassica rapa) - STRING interaction network
"Bra008966" - AT5G11390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra008966AT5G11390 (E=3e-138) | unknown protein (656 aa)    
Predicted Functional Partners:
Bra011426
AT4G33200 (E=0.0) XI-I, ATXI-I, XI-15 | XI-I; motor/ protein binding (1517 aa)
       
 
  0.941
Bra040794
AT1G47200 (E=1e-052) WPP2 | WPP2 (173 aa)
       
 
  0.829
Bra040752
AT1G47200 (E=3e-054) WPP2 | WPP2 (166 aa)
       
 
  0.829
Bra026434
AT4G26455 (E=5e-135) WIP1 | WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization (495 aa)
       
 
  0.636
Bra019104
AT4G26450 (E=6e-276) | unknown protein (708 aa)
       
 
  0.625
Bra002835
AT5G56210 (E=3e-072) WIP2 | WIP2 (WPP-domain Interacting Protein 2); protein heterodimerization/ protein homodimerization (276 aa)
       
 
  0.625
Bra002227
AT5G19320 (E=5e-211) RANGAP2 | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator (539 aa)
       
 
  0.618
Bra007730
AT3G63130 (E=1e-219) RANGAP1 | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (535 aa)
       
 
  0.615
Bra009405
AT5G04990 (E=8e-193) | sad1/unc-84 protein-related (745 aa)
           
  0.540
Bra029862
AT3G10730 (E=4e-183) | sad1/unc-84-like 2 family protein (449 aa)
           
  0.505
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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